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Presentations for Session PHYLO II

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Order	Date/Time	Title	Section/Topic	Type	Authors	Keywords
Wednesday, July 27th 8:00 am to 12:15 pm · Tubughnenq' 4/Dena'ina Center Session PHYLO II: Contributed Papers: Phylogenomics: Phylogenomics II Presiding: Carol Wilson, University Of California, Berkeley; Jeffrey Rose, University Of Wisconsin
PHYLO II001	July 27th 8:00 am	Phylogenomics and Evolution of Leaf Volatiles in the California Sages	Phylogenomics	Oral Paper	Rose, Jeffrey; Heeg, Luciann; Kriebel, Ricardo; Codina, Audrey; Keefover-Ring, Ken; Sytsma, Kenneth; Drew, Bryan.	essential oil content Lamiaceae cytonuclear discordance California Floristic Province Salvia Mediterranean climate
PHYLO II002	July 27th 8:15 am	A bird’s eye view of the systematics of Convolvulaceae: novel insights from nuclear genomic data	Phylogenomics	Oral Paper	Simões, Ana Rita; Eserman, Lauren; Zuntini, Alexandre R.; Chatrou, Lars; Utteridge, Timothy; Maurin, Olivier; Rokni, Saba; Roy, Shyamali; Forest, Felix; Baker, William; Stefanovic, Sasa.	Angiosperms353 Convolvulaceae Cuscuta phylogenomics Ipomoea Target Enrichment
PHYLO II003	July 27th 8:30 am	Evidence of admixture among hyperdominant rainforest tree species in the Parvifolia clade of Eschweilera	Phylogenomics	Oral Paper	Larson, Drew; Vargas, Oscar; Dick, Christopher.	phylogenomics Lecythidaceae Ericales admixture Neotropics hybridization introgression Tropical biodiversity targeted sequencing
PHYLO II004	July 27th 8:45 am	Cyto-nuclear Discordance in Adenia	Phylogenomics	Oral Paper	Netherland, Michael; Hearn, David.	phylogenomics Species tree cytonuclear discordance introgression
PHYLO II005	July 27th 9:00 am	Comparative Genomics and Phylogenetic Utility of the Mitochondrial Genome in Apiales	Phylogenomics	Oral Paper	Nicolas, Antoine; Earl, Victoria; Hughes, Emily; Molina, Giselle; Scollan, Brianna; Zandel, Stephanie; Plunkett, Gregory.	mitogenome Apiales Hydrocotyle Shotgun Sequencing
PHYLO II006	July 27th 9:15 am	Effects of taxon sampling and shifts in mode of organellar inheritance on Gymnosperm phylogeny	Phylogenomics	Oral Paper	Paradiso, Lydia.	gymnosperm organelle inheritance taxon sampling Pinaceae
PHYLO II007	July 27th 9:30 am	Dissecting the role of reticulate evolution in the diversification of Prunus (Rosaceae)	Phylogenomics	Oral Paper	Hodel, Richard; Zimmer, Elizabeth; Liu, Bin-Bin; Johnson, Gabriel; Potter, Daniel; Wen, Jun.	allopolyploidy hybridization phylogenetic network cytonuclear discord Hyb-Seq biogeography
PHYLO II008	July 27th 9:45 am	Break	Phylogenomics
PHYLO II009	July 27th 10:15 am	Boreotropical refugia and extensive introgressions explain the revival of north temperate diversity in the New World grapes	Phylogenomics	Oral Paper	Nie, Zelong; Hodel, Richard; Ma, Zhiyao; Johnson, Gabriel; Ren, Chen; Meng, Ying; Ickert-Bond, Steffi; Liu, Xiu-Qun; Zimmer, Elizabeth; Wen, Jun.	Boreotropical refugia New World grapes temperate radiation reticulate evolution phylogenomics biogeography Vitis Vitaceae
PHYLO II010	July 27th 10:30 am	Patterns of Species Diversification in Geissorhiza (Iridaceae): Morphological and Habitat Traits Through Time	Phylogenomics	Oral Paper	Eifler, Evan; Karimi, Nisa; Lemmon, Alan; Lemmon, Emily; Givnish, Thomas.	phylogenomics Iridaceae Diversification molecular dating Psammophory
PHYLO II011	July 27th 10:45 am	A nuclear phylogenomic overview of Rosaceae	Phylogenomics	Oral Paper	Stull, Gregory; Tian, Qin; Liu, Shui-Yin; Fu, Xiao-Gang; Kates, Heather; Folk, Ryan; Guralnick, Robert; Soltis, Pamela; Soltis, Douglas; Yi, Ting-Shuang.	hybridization phylogenomics polyploidy Rosaceae Rosales whole genome duplication
PHYLO II012	July 27th 11:00 am	Nuclear gene-based phylogenomic study resolves Poaceae phylogeny and provides insight to the evolution of C₄ photosynthesis	Phylogenomics	Oral Paper	Huang, Weichen; Zhang, Lin; Columbus, J. Travis; Hu, Yi; Zhao, Yiyong; Tang, Lin; Guo, Zhenhua; Chen, Wenli; McKain, Michael; Bartlett, Madelaine; Huang, Chien-Hsun; Li, De-zhu; Ge, Song; Ma, Hong.	Poaceae transcriptome phylogeny nuclear gene photosynthesis
PHYLO II013	July 27th 11:15 am	Phylogenomics of Spanish irises, Iris subgenus Xiphium	Phylogenomics	Oral Paper	Wilson, Carol.	biodiversity hotspot Constraint trees Iris Iridaceae mediterranean basin missing data nuclear genes phylogenomics plastomes Strait of Gibraltar targeted enrichment
PHYLO II014	July 27th 11:30 am	A genome-wide approach for resolving phylogenetic relationships of subfamily Arbutoideae (Ericaceae)	Phylogenomics	Oral Paper	Ramadoss, Niveditha; McElwee-Adame, Alexandra; Parker, V. T.; Gonzalez-Elizondo, Socorro; Litt, Amy; Flores-Renteria, Lluvia.	Arbutoideae phylogenetics Arbutus paraphyly
PHYLO II015	July 27th 11:45 am	New Plastome Structural Rearrangements Discovered in Core Tillandsioideae (Bromeliaceae) Support recently adopted taxonomy	Phylogenomics	Oral Paper	Díaz Contreras Díaz, Daniel David; Vera Paz, Sandra Itzel; Jost, Matthias; Wanke, Stefan; Rossado, Andrés; Hernández Gutiérrez, Rebeca; Salazar, Gerardo; Magallón, Susana; Gouda, Eric; Ramírez Morillo, Ivón; Donadío, Sabina; Granados Mendoza, Carolina.	Phylogenetic informativeness Inverted repeats (IR) Gene translocation Inversions Ancestral state reconstruction Evolutionary rate shifts
PHYLO II016	July 27th 12:00 pm	The Australian Angiosperm Tree of Life project	Phylogenomics	Oral Paper	Allnutt, Theodore; Barrett, Matthew; Brown, Gillian; Crayn, Darren; Jackson, Chris; Lum, Mabel; McLay, Todd; Murphy, Daniel; Nargar, Katharina; Sauquet, Hervé; Schmidt-Lebuhn, Alexander; Shepherd, Kelly; Simpson, Lalita; Van Dijk, Korjent; Waycott, Michelle.	Australia target-capture phylogenomics Angiosperms